pubmed-search
Search PubMed biomedical literature with natural language queries powered by Valyu semantic search. Full-text access, integrate into your AI projects.
By yorkeccak · 710 installs
npx skills add yorkeccak/scientific-skills --skill pubmed-search
Source repository · Upstream listing
PubMed Search
Search the complete PubMed database of biomedical literature using natural language queries powered by Valyu's semantic search API.
Why This Skill is Powerful
No API Parameter Parsing : Just pass natural language queries directly no need to construct complex search parameters
Semantic Search : Understands the meaning of your query, not just keyword matching
Full Text Access : Returns complete article content, not just abstracts
Image Links : Includes figures and images from papers
Comprehensive Coverage : Access to all of PubMed's biomedical literature
Requirements
1. Node.js 18+ (uses built in fetch)
2. Valyu API key from https://platform.valyu.ai ($10 free credits)
CRITICAL: Script Path Resolution
The scripts/search commands in this documentation are relative to this skill's installation directory.
Before running any command, locate the script using:
Then use the full path for all commands:
API Key Setup Flow
When you run a search and receive "setup required": true , follow this flow:
1. Ask the user for their API key:
"To search PubMed, I need your Valyu API key. Get one free ($10 credits) at https://platform.valyu.ai"
2. Once the user provides the key, run:
3. Retry the original search.
Example Flow:
Usage
Basic Search
Examples
Setup Command
Output Format
Processing Results
With jq
Common Use Cases
Literature Review
Drug Discovery
Clinical Research
Gene Function
Error Handling
All commands return JSON with success field:
Exit codes:
0 Success
1 Error (check JSON for details)
API Endpoint
Base URL: https://api.valyu.ai/v1
Endpoint: /search
Authentication: X API Key header
Architecture
Direct API calls using Node.js built in fetch() , zero external dependencies.
Adding to Your Project
If you're building an AI project and want to integrate PubMed search directly into your application, use the Valyu SDK:
Python Integration
TypeScript Integration
See the [Valyu docs](https://docs.valyu.ai) for full integration examples and SDK reference.