Orchestrate the full paper pipeline end-to-end. Manage state propagation between phases (literature → plan → code → experiments → figures → tables → writing → review), support checkpointing and resumption. Use for assembling a complete paper from components.

Paper Assembly Orchestrate the entire paper pipeline end to end with state management and checkpointing. Input $0 — Paper project directory or paper plan References Orchestration patterns and state management: ~/.claude/skills/paper assembly/references/orchestration patterns.md Scripts Check pipeline completeness Scans paper directory, checks 9 pipeline phases, reports missing artifacts, suggests next steps. Workflow Step 1: Assess Current State 1. Scan the paper directory for existing artifacts 2. Identify which phases are complete vs pending 3. Build a dependency graph of remaining work Step 2: Execute Pipeline Phases Run phases in dependency order: Phase Skill Input Output 1. Literature literature search, literature review Topic Knowledge base, BibTeX 2. Planning research planning Knowledge base Paper structure, task list 3. Code experiment code Plan Training/eval pipeline 4. Experiments experiment design Code Results JSON/CSV 5. Figures figure generation Results PNG figures 6. Tables table generation Results LaTeX tables 7. Writing paper writing section All above main.tex sections 8. Citations citation management Draft references.bib 9. Formatting latex formatting Draft Formatted LaTeX 10. Compilation paper compilation All PDF 11. Review self review PDF Review scores Step 3: State Propagation After each phase completes: 1. Save output artifacts to the paper directory 2. Propagate results to downstream phases 3. Update the progress checkpoint file Step 4: Quality Gates Before proceeding to the next phase: Verify all required outputs exist Check for consistency (e.g., all cited keys in .bib) Validate figures/tables match experimental results Step 5: Final Assembly 1. Merge all sections into main.tex 2. Verify all \includegraphics files exist 3. Verify all \cite keys exist in .bib 4. Compile to PDF 5. Run self review for quality check Orchestration Patterns Sequential Pipeline (AI Scientist) Multi Agent State Broadcasting (AgentLaboratory) Copilot Mode (AgentLaboratory) Human can intervene at any phase boundary for review/correction. Checkpoint Format Rules Never skip phases — each depends on previous outputs Save checkpoints after every phase completion Human review is recommended at phase boundaries All numbers in the paper must trace to actual experiment logs Re run downstream phases if upstream changes Related Skills Upstream: all other skills (this is the orchestrator) Downstream: [paper compilation](../paper compilation/), [self review](../self review/) See also: [research planning](../research planning/)

paper-assembly